Papers
Paper
Authors
Standardized metadata for human pathogen/vector genomic sequences.
PLoS One. 2014 Jun 17;9(6):e99979. https://doi.org/10.1371/journal.pone.0099979
Dugan VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ Jr, Sullivan DE, Singh I, Ward DV, Yao A, Zheng J, Barrett T, Birren B, Brinkac L, Bruno VM, Caler E, Chapman S, Collins FH, Cuomo CA, Di Francesco V, Durkin S, Eppinger M, Feldgarden M, Fraser C, Fricke WF, Giovanni M, Henn MR, Hine E, Hotopp JD, Karsch-Mizrachi I, Kissinger JC, Lee EM, Mathur P, Mongodin EF, Murphy CI, Myers G, Neafsey DE, Nelson KE, Nierman WC, Puzak J, Rasko D, Roos DS, Sadzewicz L, Silva JC, Sobral B, Squires RB, Stevens RL, Tallon L, Tettelin H, Wentworth D, White O, Will R, Wortman J, Zhang Y, Scheuermann RH.
The ontology for biomedical investigations.
PloS one, 11(4), p.e0154556. https://doi.org/10.1371/journal.pone.0154556
Anita Bandrowski, Ryan Brinkman, Mathias Brochhausen, Matthew H. Brush, Bill Bug †, Marcus C. Chibucos, Kevin Clancy, Mélanie Courtot, Dirk Derom, Michel Dumontier, Liju Fan, Jennifer Fostel, Gilberto Fragoso, Frank Gibson, Alejandra Gonzalez-Beltran, Melissa A. Haendel, Yongqun He, Mervi Heiskanen, Tina Hernandez-Boussard, Mark Jensen, Yu Lin, Allyson L. Lister, Phillip Lord, James Malone, Elisabetta Manduchi, Monnie McGee, Norman Morrison, James A. Overton, Helen Parkinson, Bjoern Peters , Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H. Scheuermann, Daniel Schober, Barry Smith, Larisa N. Soldatova, Christian J. Stoeckert Jr., Chris F. Taylor, Carlo Torniai, Jessica A. Turner, Randi Vita, Patricia L. Whetzel, Jie Zheng.
Modeling biomedical experimental processes with OBI.
In Journal of biomedical semantics (Vol. 1, No. 1, p. S7). BioMed Central.
https://doi.org/10.1186/2041-1480-1-S1-S7
Ryan R Brinkman, Mélanie Courtot, Dirk Derom, Jennifer M Fostel, Yongqun He, Phillip Lord, James Malone, Helen Parkinson, Bjoern Peters, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Larisa N SoldatovaEmail author, Christian J Stoeckert Jr., Jessica A Turner, Jie Zheng and the OBI consortium, 2010, June.
The OWL of Biomedical Investigations.
In OWLED (Vol. 432), 2008, October.
http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.142.9206&rep=rep1&type=pdf
Mélanie Courtot, William Bug, Frank Gibson, Allyson L. Lister, James Malone, Daniel Schober, Ryan R. Brinkman and Alan Ruttenberg
Posters
Ontology for biomedical investigations
http://precedings.nature.com/documents/3623/version/1
TURBO: Transforming and Unifying Research with Biomedical Ontologies
https://github.com/PennTURBO/Turbo-Documentation/blob/master/IBI_CIC_TURBO_MAM_20190102.pdf
Applications of OBI “assay” - ICBO 2014 Proceedings
| Paper | Authors |
|---|---|
| Standardized metadata for human pathogen/vector genomic sequences. PLoS One. 2014 Jun 17;9(6):e99979. https://doi.org/10.1371/journal.pone.0099979 |
Dugan VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ Jr, Sullivan DE, Singh I, Ward DV, Yao A, Zheng J, Barrett T, Birren B, Brinkac L, Bruno VM, Caler E, Chapman S, Collins FH, Cuomo CA, Di Francesco V, Durkin S, Eppinger M, Feldgarden M, Fraser C, Fricke WF, Giovanni M, Henn MR, Hine E, Hotopp JD, Karsch-Mizrachi I, Kissinger JC, Lee EM, Mathur P, Mongodin EF, Murphy CI, Myers G, Neafsey DE, Nelson KE, Nierman WC, Puzak J, Rasko D, Roos DS, Sadzewicz L, Silva JC, Sobral B, Squires RB, Stevens RL, Tallon L, Tettelin H, Wentworth D, White O, Will R, Wortman J, Zhang Y, Scheuermann RH. |
| The ontology for biomedical investigations. PloS one, 11(4), p.e0154556. https://doi.org/10.1371/journal.pone.0154556 |
Anita Bandrowski, Ryan Brinkman, Mathias Brochhausen, Matthew H. Brush, Bill Bug †, Marcus C. Chibucos, Kevin Clancy, Mélanie Courtot, Dirk Derom, Michel Dumontier, Liju Fan, Jennifer Fostel, Gilberto Fragoso, Frank Gibson, Alejandra Gonzalez-Beltran, Melissa A. Haendel, Yongqun He, Mervi Heiskanen, Tina Hernandez-Boussard, Mark Jensen, Yu Lin, Allyson L. Lister, Phillip Lord, James Malone, Elisabetta Manduchi, Monnie McGee, Norman Morrison, James A. Overton, Helen Parkinson, Bjoern Peters , Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H. Scheuermann, Daniel Schober, Barry Smith, Larisa N. Soldatova, Christian J. Stoeckert Jr., Chris F. Taylor, Carlo Torniai, Jessica A. Turner, Randi Vita, Patricia L. Whetzel, Jie Zheng. |
| Modeling biomedical experimental processes with OBI. In Journal of biomedical semantics (Vol. 1, No. 1, p. S7). BioMed Central. https://doi.org/10.1186/2041-1480-1-S1-S7 |
Ryan R Brinkman, Mélanie Courtot, Dirk Derom, Jennifer M Fostel, Yongqun He, Phillip Lord, James Malone, Helen Parkinson, Bjoern Peters, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Larisa N SoldatovaEmail author, Christian J Stoeckert Jr., Jessica A Turner, Jie Zheng and the OBI consortium, 2010, June. |
| The OWL of Biomedical Investigations. In OWLED (Vol. 432), 2008, October. http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.142.9206&rep=rep1&type=pdf |
Mélanie Courtot, William Bug, Frank Gibson, Allyson L. Lister, James Malone, Daniel Schober, Ryan R. Brinkman and Alan Ruttenberg |
Posters
Ontology for biomedical investigations
http://precedings.nature.com/documents/3623/version/1
TURBO: Transforming and Unifying Research with Biomedical Ontologies
https://github.com/PennTURBO/Turbo-Documentation/blob/master/IBI_CIC_TURBO_MAM_20190102.pdf
Applications of OBI “assay” - ICBO 2014 Proceedings